PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031040
Common NameLOC102593535
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23093.6 Da    PI: 8.2365
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031040genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94e-26959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          kri++k  rqv f+kRr+g+lKKA+E+S+LCd++vav+i+s++g+l+e+ss
  PGSC0003DMP400031040  9 KRIQDKNCRQVAFCKRRKGLLKKAKEISILCDVDVAVVIISNRGRLHEFSS 59
                          79***********************************************96 PP
2K-box41.65.3e-15971702699
                 K-box  26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                              e Lq++ R+l   + + L++ +L +Le++L+++l ++Rs+K++l+le  ++l +kek lqee+k L+ +++
  PGSC0003DMP400031040  97 TMGELLQTTERQLEETNADGLTVTDLIHLENELQTALIQVRSRKTHLMLECAKDLHEKEKLLQEEKKHLEDNIA 170
                           55689****************************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.525161IPR002100Transcription factor, MADS-box
CDDcd002652.62E-31273No hitNo description
SuperFamilySSF554551.83E-27279IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-23323IPR002100Transcription factor, MADS-box
PfamPF003198.9E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.21885175IPR002487Transcription factor, K-box
PfamPF014861.8E-1297169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISILCD VDVAVVIISN RGRLHEFSSN  60
NSLSGMLQRY ESHVEAEKEI NAEIQVAEHS KYSGFTTMGE LLQTTERQLE ETNADGLTVT  120
DLIHLENELQ TALIQVRSRK THLMLECAKD LHEKEKLLQE EKKHLEDNIA SIKKNTKVNE  180
MSDLPAPHIF CGQQRVTLNF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S8e-16184184Myocyte-specific enhancer factor 2B
1tqe_R8e-16184184Myocyte-specific enhancer factor 2B
1tqe_Q8e-16184184Myocyte-specific enhancer factor 2B
1tqe_P8e-16184184Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755244e-72HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170243.11e-146PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
TrEMBLM1BI831e-146M1BI83_SOLTU; Uncharacterized protein
STRINGSolyc12g087830.1.11e-115(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.18e-32MIKC_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]